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 1  ~ cpan.org
Bio:: DB :: GFF - search.cpan.orgBio:: DB :: GFF provides fast indexed access to a sequence annotation database. It supports multiple database types (ACeDB, relational), and multiple schemas ...
 2  ~ bioperl.org
Module:Bio:: DB :: GFF - BioPerlIntroduction. The Bio:: DB :: GFF Perl module is an interface to a database of simple sequence feature annotations and sequence data.
 3  +7 ensembl.org
GFF /GTF File Format - EnsemblThe GFF (General Feature Format) format consists of one line per feature, each ... or the data source ( database or project name); feature - feature type name, e.g. ...
 5  +1 pythonhosted.org
Introduction — gffutils 0.1 documentation - PythonHosted.orggffutils ships with the GFF annotation of this gene, downloaded from release 5.54 of .... db = gffutils.create_db(fn, dbfn='test. db ', force=True, keep_order=True, ...
 6  +1 biostars.org
What is the difference between GTF AND GFF format - BiostarI think it is explained here pretty well. of the GFF version 2 format. A flavor of GTF ...
 7  +70 seqanswers.com
converting GFF to GTF - SEQanswersI want to convert a GFF file from Flybase into a GTF file and I'm having a lot of ... Here is a description of the difference between GTF and GFF :
 8  ~ metacpan.org
Bio:: DB :: GFF ::Adaptor::berkeleydb - MetaCPAN.orgBio:: DB :: GFF database adaptor for in-memory databases.
 9  +5 freebsd.org
Bio:: DB :: GFF ::Aggregator::transcript(3) - The FreeBSD ProjectThis library is free software; you can redistribute it and/or modify it under the same terms as Perl itself. perl v5.12.4 2011-Bio:: DB :: GFF ::Aggregator::transcript( 3) ...
 10  +5 gmod.org
GBrowse Backends - GMODThis page describes the GBrowse database back ends. ... 1.1 The GFF3 Format; 1.2 Using Bio:: DB ::SeqFeature::Store with Flat Files; 1.3 Using ...
 11  -7 mpg.de
GBrowse Tutorial (Bio:: DB :: GFF version) - ChlamyCycThis is an older tutorial that concentrates on using GBrowse with the Bio:: DB :: GFF data adapter and GFF2-format files. For the new tutorial that ...
 12  +10 ucsc.edu
Genes in gtf or gff format - GenomewikiNow you can use the command to extract GTF files directly from the UCSC database . For example, fetch the UCSC gene track from hg19 into ...
 13  +88 broadinstitute.org
GFF3 - Broad InstituteGFF3 is the most recent flavor of GFF (General Feature Format), a simple tab .... This field is the one important difference between GFF flavors.
 14  -1 ubuntu.com
bulk_load_gff.pl - Bulk-load a Bio:: DB :: GFF database from GFF files.This script loads a Bio:: DB :: GFF database with the features contained in a list of GFF files and/or FASTA sequence files. You must use the exact variant of GFF ...
 15  -10 github.com
bioperl-live/scripts/Bio- DB - GFF at master · bioperl/bioperl-live · GitHubThese are scripts that go with the Bio:: DB :: GFF module, a basic seqfeature database. Install these scripts if you wish to use the LDAS distributed annotation  ...
 16  +1 mit.edu
Bio- DB - GFF - MITIndex of /seven/src/bioperl/bioperl-1.2/scripts/Bio- DB - GFF ... These are utilities that go with the Bio:: DB :: GFF module: load_gff.pl Slow but foolproof GFF table to  ...
 17  +12 jdsu.com
Thin Film Gain Flattening Filter - JDSUThe JDSU thin film GFF offers an excellent match to the target loss profile ... excess loss and error function, even for exceptionally deep (>20 dB ) and steep GFF .
 18  +3 rpmfind.net
RPM resource perl(Bio:: DB :: GFF ::Adaptor::biofetch) - RPMfind.netSystem Arch. RPM resource perl(Bio:: DB :: GFF ::Adaptor::biofetch). No package found of name perl(Bio:: DB :: GFF ::Adaptor::biofetch). Generated by rpm2html 1.6.
 19  -10 perl.org
README. gff3 - The CPAN Search SiteThe main issue is that Bio:: DB :: GFF is only able to support features that have two levels, for example an mRNA transcript and its exons, while GFF3 allows ...
 20  -4 polarhome.com
Bio:: DB :: GFF ::Adaptor::memory man page on Fedora - PolarhomeIt can be used to store and retrieve SHORT GFF files. It inherits from Bio:: DB :: GFF . CONSTRUCTOR Use Bio:: DB :: GFF ->new() to construct new instances of this ...
 21  +79 scales-chords.com
Musical Scale Search Tool: Scales with notes A C#/ Db G F FMusical Scale Finder Tool Results Page: Scales with notes A C#/ Db G F F . This tool allows you to find a scale that fits your melody, or maybe some chord ...
 22  +2 uky.edu
Man page of Bio:: DB :: GFF ::Adaptor::memoryBio:: DB :: GFF ::Adaptor::memory. Section: User Contributed Perl Documentation ( 3pm) Updated: 2010-02-26. Index Return to Main Contents ...
 23  +77 kiz.ac.cn
GENBANK_HOWTOInstall the GFF file into the databases directory; 3. Set up the configuration file; 4. Edit the configuration file as appropriate. Using the GBrowse GFF database with  ...
 25  -14 umich.edu
fast_load_gff.plblib/lib'; use DBI; use IO::File; use Getopt::Long; use Bio:: DB :: GFF ::Util::Binning ' bin'; use Bio:: DB :: GFF ::Adaptor::dbi::mysqlopt; use constant ...
 26  +18 nimblegen.com
Roche NimbleGen | Human Genome HG18 Annotation FilesGenes_July_2010_hg19. gff , Indicates all genes for build hg19 as reported in the ... Displays all copy number variants as reported in the Database of Genomic ...
 27  +43 clemson.edu
gbrowse integrationThe solution presented here is to interweave their database schemas by merging the .... description = CMap Integrated db_adaptor = Bio:: DB :: GFF db_args ...
 28  ~ kokocinski.netGFF Format - Bioinformatics work notesGFF is a file format used for describing genes and other features of DNA, RNA ...
 30  ~ fdk.comOptical devices / Hybrid optical isolators / Optical GFF Module: YM-121thin film technology. The shape of GFF is designed by a customer's individual request. ... Polarization dependent loss, -, 0.15 dB *1, To, λo. Error Function, -, 0.6  ...
 31  ~ iridian.caIridian - Gain Flattening Filter ( GFF ) TutorialGain Flattening Filter (GFFs), also known as gain equalizing filters, are used to flatten ... The modulation depth is defined as the difference between the maximum ...
 32  ~ fdk.co.jp
Optical devices / Hybrid optical isolators / + GFF : YM-101 - FDKThis module has the GFF ( gain flattening filter ) and Isolator functions. ... o 2 function hybrid, Isolator and GFF ... Polarization dependent loss, -, 0.20 dB , To, λo .
 34  ~ sequenceontology.orgThe Sequence Ontology - DatabasesBelow is a list of databases which we have found provide SO compliant data for download in either GFF3 , ChaosXML or Chado database dumps (GBrowse links  ...
 35  -7 gatech.edu
DATABASE DEMO This demo is mainly about how to load GFF files This demo is mainly about how to load GFF files into the database and then configure the database with gbrowse . It has 3 steps. 1) Prepare your data. 2) Load ...
 36  ~ insectacentral.orgflatfile-to-json.pl - InsectaCentral#!/usr/bin/env perl use strict; use warnings; use FindBin qw($Bin); use lib "$Bin/../ lib"; use Getopt::Long; use Bio::DB::SeqFeature::Store; use Bio:: DB :: GFF ; use ...
 37  +48 linuxcertif.com
Linux Certif - Man bp_bulk_load_gff.pl(1)Page de manuel de bp_bulk_load_gff.pl - This script loads a Bio:: DB :: GFF database with the features contained in a list of GFF files and/or FASTA sequence files ...
 38  +62 vital-it.ch
Support for the Chado database schemalib/Bio/ DB /Das/Chado.pm lib/Bio/ DB /Das/Chado/Segment.pm ... cat sequence- gff -views.sql | psql <chado- database -name> % cat sequence- gff -funcs.pgsql ...
 39  -27 google.com
DataFileFormats - biotoolbox - A description of different data formats In GFF v1, the ninth column is comprised of a single word that describe a group. ... GFF files are best used by loading them into a SQL database (SQLite, MySQL,  ...
 40  -7 icgeb.res.in
GFF -EX Using same terminal move to the directory containing the input files and run GFF - Ex [GFF_INSTALLATION_PATH/gffex -in <gff_file> - db <genome_file>] Usage ...
 43  ~ lightwaves2020.comGain Flattening Filters ( GFF ) - Lightwaves2020.com>Peak-to-valley in the IL profile as high as more than 10dB; >For typical GFF , the common peak-to-peak error function is below 0.3 dB ; >Able to make the GFF  ...
 44  -5 sfu.ca
GBrowsethe Generic Model Organism Database (GMOD) project. ❑ Collection of open ... / var/www/html/gbrowse/databases/<dbname>/<whatever> gff .
 45  +56 openbioinformatics.org
ANNOVAR website - OpenBioinformatics.orgIt is important to explain the difference between region-based annotation and ... supply your own region annotation databases in generic, BED or GFF formats.
 46  -21 ncifcrf.gov
Genomic Database Search Tools - non-B DBAllows users to search the non-B DB DAS by feature. In nonbDAS, for example, a feature is defined as any of the following: a-phased repeat, direct repeat, ...
 47  +32 bioconductor.org
Package 'GenomicFeatures' - BioconductorBrowser or a BioMart database (more sources will be supported in the future). .... If a TranscriptDb is passed to export, when targeting a BED or GFF file,.
 48  ~ eugenes.orgcdsphase.plusr/bin/perl =head1 cdsphase.pl read GFF , genome fasta, check CDS_exon ..... __END__ #item fasta db # dbm based index; not platform independent my ...
 49  ~ biojava.orgDazzle:plugins - BioJavaThe Ldas plugin is an annotation datasource which reads from a Bio:: DB :: GFF format database, and is largely compatible with the LDAS DAS ...
 50  ~ dehn.atProduktdatenblatt - DehnIntegrierter Messausgang bei den Ableitern FF und GFF ... 1,7 dB . Einfügungsdämpfung 862-2400 MHz typ. 1,9 dB . Rückflussdämpfung (5-8 MHz). ≥ 10 dB .
 52  ~ flybase.org
FlyBase: Precomputed filesChado database (ftp://ftp.flybase.net/releases/FB2014_04/psql) .... GFF . dana-all- r1.3. gff .gz · dana-gff_all_scaffolds-r1.3.tar.gz. hide Drosophila erecta (Dere).
 53  ~ hpa-bioinformatics.org.ukClass: Bio:: GFF :: GFF3 [BioRuby API documentation]In: lib/bio/ db / gff .rb. Parent: Bio::GFF ... Represents version 3 of GFF specification. For more information on version GFF3, see song.sourceforge.net/gff3.shtml ...
 54  +18 sanger.ac.uk
Software - Wellcome Trust Sanger InstituteAnalysis; Annotation; Assembly; Database software; Data formats; Gene ... a platform of database and web services for integrative analysis and ...
 55  ~ lightwavestore.comPowerBragg™ 1902 GFF Fiber Bragg Grating Non-Reflecting Gain In addition, the PowerBraggTM 1902 GFF features lower spectral ripples ( reduced ... factor of up to 2) and a return loss of 25 dB or better (depending on profiles) ...
 56  -15 oplink.com
GREEN GAIN FLATTENING FILTER0.8. dB . Peak to Peak in Error Function [4]. 0.6. 0.8. dB . Polarization Dependent Loss. 0.1. dB . Return Loss (input & output). 50. dB . Polarization Mode Dispersion.